Table 4 A comparison between the chromosome territory positioning of actual porcine chromosomes from 2D FISH studies with respect to synteny with human chromosomes, porcine epigenetic markers, in silico gene data and chromosome size
From: Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues
| Â | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 11 | 13 | 15 | 16 | 17 | 18 | X |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chromosome size (Mbp): | 295 | 168 | 149 | 146 | 118 | 177 | 141 | 158 | 94 | 230 | 161 | 101 | 77 | 68 | 145 |
Sequenced Length (Mbp): | 295 | 140 | 124 | 136 | 101 | 123 | 136 | 120 | 80 | 145 | 135 | 77 | 64 | 54 | 126 |
Known Protein-coding Genes: | 80 | 56 | 32 | 40 | 39 | 46 | 125 | 20 | 3 | 29 | 13 | 8 | 28 | 9 | 17 |
Novel Protein-coding Genes: | 1,716 | 1,642 | 1,070 | 1,012 | 923 | 1,304 | 1,463 | 552 | 289 | 843 | 698 | 326 | 532 | 355 | 684 |
Pseudogene Genes: | 62 | 31 | 23 | 28 | 22 | 22 | 54 | 20 | 6 | 32 | 23 | 4 | 16 | 11 | 32 |
miRNA Genes: | 68 | 45 | 27 | 26 | 27 | 46 | 50 | 21 | 17 | 30 | 19 | 19 | 17 | 23 | 75 |
rRNA Genes: | 12 | 8 | 10 | 16 | 10 | 11 | 11 | 5 | 7 | 10 | 6 | 7 | 6 | 3 | 9 |
snRNA Genes: | 106 | 44 | 52 | 51 | 47 | 69 | 60 | 38 | 29 | 60 | 55 | 42 | 28 | 27 | 60 |
snoRNA Genes: | 65 | 34 | 30 | 26 | 20 | 41 | 52 | 20 | 10 | 31 | 28 | 9 | 10 | 5 | 26 |
Misc RNA Genes: | 20 | 11 | 7 | 14 | 5 | 12 | 10 | 10 | 6 | 9 | 6 | 2 | 2 | 3 | 8 |
Total number of genes | 2129 | 1871 | 1251 | 1213 | 1093 | 1551 | 1825 | 686 | 367 | 1044 | 848 | 417 | 639 | 436 | 911 |
Predicted gene density | 7.2 | 11.1 | 8.4 | 8.3 | 9.3 | 8.8 | 12.9 | 4.3 | 3.9 | 4.5 | 5.3 | 4.1 | 8.3 | 6.4 | 6.3 |