A new standard nomenclature for proteins related to Apx and Shroom

Table 2 Sequence identity matrix for the four different Shroom proteins which have been characterised experimentally.

Shroom^a	1	2	3	4a
1	100/NA/100/100^b	11.7/NA/32.9/37.7	10.9/NA/29.8/32.9	9.5/NA/NA/35.3
2		100/100/100/100	25.4/67.5/44.6/68.2	20.1/61.0/NA/65.8
3			100/100/100/100	15.9/63.6/NA/61.6
4a				100/100/NA/100

^a This table makes use of the new nomenclature presented in Table 1. To avoid evolution-based dissimilarity, the human homologues have been used in the analysis. ^b Percent sequence identity is given in the format global/PDZ/ASD1/ASD2; NA, not applicable. Global sequence identity is based on those residues aligning to hShroom1 residues 1 – 826. The alignments on which this matrix is based were created using ClustalW. They are available upon request.

ISSN: 2661-8850