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Table 1 Genes with cell cycle-specific transcripts

From: Transcriptome changes and cAMP oscillations in an archaeal cell cycle

No. cluster*1 identifier*2 g.c./ow*3 gene name functional class
1 1 OE2697R   probable coenzyme PQQ synthesis protein E coenzyme metabolism
2 1 OE3763F I glycerol-3-phosphate dehydrogenase chain A central intermediary metabolism
3 1 OE3764F I glycerol-3-phosphate dehydrogenasechain B central intermediary metabolism
4 1 OE3765F I glycerol-3-phosphate dehydrogenase chain C central intermediary metabolism
5 1 OE4345R   probable ribonucleoside-diphosphate reductase nucleotide metabolism
6 2 OE1806R   probable periplasmic protein cell envelope
7 2 OE2844R   transcription regulator homolog/trkA C-terminal domain gene regulation
8 2 OE3308F   malate dehydrogenase central intermediary metabolism
9 2 OE3759R   hypothetical protein hypothetical protein
10 2 OE3922R   glutamate-ammonia ligase (EC 6.3.1.2) amino acid metabolism
11 2 OE5212F   SMC-like protein sph1 cellular processes
12 3 OE1620R   phosphoribosylglycinamide formyltransferase nucleotide metabolism
13 3 OE1951F I phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) nucleotide metabolism
14 3 OE1952F I phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) nucleotide metabolism
15 3 OE2274R   phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) nucleotide metabolism
16 3 OE2864F   phosphoribosylamine--glycine ligase (EC 6.3.4.13) nucleotide metabolism
17 3 OE3017R   UDP-sugar hydrolase (EC 3.6.1.45)/5'-nucleotidase nucleotide metabolism
18 3 OE3139R   amidophosphoribosyltransferase (EC 2.4.2.14) nucleotide metabolism
19 3 OE3724F   phosphoribosylaminoimidazolesuccinocarboxamide nucleotide metabolism
     synthase  
20 4 OE1500R   pyruvate, water dikinase (EC 2.7.9.2) (PEP synthase) central intermediary metabolism
21 4 OE2019F   fructose-bisphosphate aldolase (EC 4.1.2.13) 1 central intermediary metabolism
22 4 OE4416R I conserved protein conserved hypothetical protein
23 4 OE4418R I hypothetical protein hypothetical protein
24 4 OE4419R I argininosuccinate lyase (EC 4.3.2.1) amino acid metabolism
25 4 OE6026R   transcription initiation factor TFB transcription
26 5 OE1058R   probable transposase (ISH1) transposases/ISH proteins
27 5 OE1270F I glutamate dehydrogenase (EC 1.4.1.-) amino acid metabolism
28 5 OE1271F I probable fatty-acid--CoA ligase (EC 6.2.1.-) lipid metabolism
29 5 OE1352F I hypothetical protein hypothetical protein
30 5 OE1353F I hypothetical protein hypothetical protein
31 5 OE1356F I conserved hypothetical protein conserved hypothetical protein
32 5 OE1447R I conserved hypothetical protein conserved hypothetical protein
33 5 OE1448R I conserved hypothetical protein conserved hypothetical protein
34 5 OE1775R   hypothetical protein hypothetical protein
35 5 OE2046F   conserved hypothetical protein conserved hypothetical protein
36 5 OE2492F   conserved protein conserved hypothetical protein
37 5 OE3168R   pyridoxal phosphate-dependent aminotransferase miscellaneous
38 5 OE3554F   carbamoyl-phosphate synthase amino acid metabolism
39 5 OE3612R   chemotactic signal transduction system signal transduction
     periplasmic substrate-binding protein basB  
40 5 OE3653R I phosphoglycerate mutase (EC 5.4.2.1) central intermediary metabolism
41 5 OE3654R I hypothetical protein hypothetical protein
42 5 OE3925R   thermosome beta chain cellular processes
43 5 OE4122R   thermosome alpha chain cellular processes
44 5 OE4159F   adenosylhomocysteinase (EC 3.3.1.1) amino acid metabolism
45 5 OE4300R I hypothetical protein hypothetical protein
46 5 OE4301R I ABC-type transport system ATP-binding protein small molecule transport
47 5 OE4302R I ABC-type transport system ATP-binding protein small molecule transport
48 5 OE4303R I ABC-type transport system permease protein small molecule transport
49 5 OE4304R I ABC-type transport system permease protein small molecule transport
50 5 OE4311F I ABC-type transport system substrate-binding protein small molecule transport
51 5 OE4316F I ABC-type transport system permease protein small molecule transport
52 5 OE4318F I ABC-type transport system ATP-binding protein small molecule transport
53 5 OE4408F I phosphoglycerate dehydrogenase (EC 1.1.1.95) amino acid metabolism
54 5 OE4410F I acyl-CoA thioester hydrolase homolog conserved hypothetical protein
55 5 OE4550F I ABC-type transport system ATP-binding protein small molecule transport
56 5 OE4552F I ABC-type transport system permease protein small molecule transport
57 5 OE4555F I ABC-type transport system permease protein small molecule transport
58 5 OE4676F   hypothetical protein hypothetical protein
59 5 OE4688F   conserved protein conserved hypothetical protein
60 6 OE1794R I conserved hypothetical protein conserved hypothetical protein
61 6 OE1797R I transcription regulator sirR gene regulation
62 7 OE1674R I probable phosphate transport operon protein phoU transport
63 7 OE1675R I ABC-type transport system ATP-binding protein small molecule transport
64 7 OE1676R I ABC-type transport system permease protein small molecule transport
65 7 OE1678R I ABC-type transport system permease protein small molecule transport
66 7 OE1679R I ABC-type transport system periplasmic binding protein small molecule transport
67 7 OE2367F   aldehyde dehydrogenase miscellaneous
68 7 OE2458R   IMP dehydrogenase (EC 1.1.1.205) nucleotide metabolism
69 7 OE2924R   conserved hypothetical protein conserved hypothetical protein
70 7 OE3571R I GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) nucleotide metabolism
71 7 OE3572R I CTP synthase (EC 6.3.4.2) nucleotide metabolism
72 7 OE4462F   conserved hypothetical protein conserved hypothetical protein
73 7 OE4466R   DNA repair protein replication, repair, recombination
74 7 OE5160F   glycerol dehydrogenase (EC 1.1.1.6) miscellaneous
75 7 OE5204R I arginine ornithine exchanger small molecule transport
76 7 OE5205R I ornithine carbamoyltransferase (EC 2.1.3.3) amino acid metabolism
77 7 OE5206R I carbamate kinase (EC 2.7.2.2) amino acid metabolism
78 7 OE5208R I arginine deiminase (EC 3.5.3.6) amino acid metabolism
79   OE1249R   conserved hypothetical protein conserved hypothetical protein
80   OE1302F   lipoate-protein ligase homolog miscellaneous
81   OE2703F   probable copper-containing oxidoreductase miscellaneous
82   OE2973F   conserved hypothetical protein conserved hypothetical protein
83   OE3337F   insertion element protein (ISH2) transposases/ISH proteins
84   OE4077F   hypothetical protein hypothetical protein
85   OE4380F   cell division control protein cdc6 homolog cellular processes
86   OE7065F I cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain I energy metabolism
87   OE7066F I cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain II energy metabolism
  1. *1 regulatory cluster (compare Fig. 2)
  2. *2 identifier in the genome sequence [23]
  3. *3 gene cluster or operon