Table 1 Genes with cell cycle-specific transcripts
From: Transcriptome changes and cAMP oscillations in an archaeal cell cycle
No. | cluster*1 | identifier*2 | g.c./ow*3 | gene name | functional class |
|---|---|---|---|---|---|
1 | 1 | OE2697R | probable coenzyme PQQ synthesis protein E | coenzyme metabolism | |
2 | 1 | OE3763F | I | glycerol-3-phosphate dehydrogenase chain A | central intermediary metabolism |
3 | 1 | OE3764F | I | glycerol-3-phosphate dehydrogenasechain B | central intermediary metabolism |
4 | 1 | OE3765F | I | glycerol-3-phosphate dehydrogenase chain C | central intermediary metabolism |
5 | 1 | OE4345R | probable ribonucleoside-diphosphate reductase | nucleotide metabolism | |
6 | 2 | OE1806R | probable periplasmic protein | cell envelope | |
7 | 2 | OE2844R | transcription regulator homolog/trkA C-terminal domain | gene regulation | |
8 | 2 | OE3308F | malate dehydrogenase | central intermediary metabolism | |
9 | 2 | OE3759R | hypothetical protein | hypothetical protein | |
10 | 2 | OE3922R | glutamate-ammonia ligase (EC 6.3.1.2) | amino acid metabolism | |
11 | 2 | OE5212F | SMC-like protein sph1 | cellular processes | |
12 | 3 | OE1620R | phosphoribosylglycinamide formyltransferase | nucleotide metabolism | |
13 | 3 | OE1951F | I | phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) | nucleotide metabolism |
14 | 3 | OE1952F | I | phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) | nucleotide metabolism |
15 | 3 | OE2274R | phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) | nucleotide metabolism | |
16 | 3 | OE2864F | phosphoribosylamine--glycine ligase (EC 6.3.4.13) | nucleotide metabolism | |
17 | 3 | OE3017R | UDP-sugar hydrolase (EC 3.6.1.45)/5'-nucleotidase | nucleotide metabolism | |
18 | 3 | OE3139R | amidophosphoribosyltransferase (EC 2.4.2.14) | nucleotide metabolism | |
19 | 3 | OE3724F | phosphoribosylaminoimidazolesuccinocarboxamide | nucleotide metabolism | |
synthase | |||||
20 | 4 | OE1500R | pyruvate, water dikinase (EC 2.7.9.2) (PEP synthase) | central intermediary metabolism | |
21 | 4 | OE2019F | fructose-bisphosphate aldolase (EC 4.1.2.13) 1 | central intermediary metabolism | |
22 | 4 | OE4416R | I | conserved protein | conserved hypothetical protein |
23 | 4 | OE4418R | I | hypothetical protein | hypothetical protein |
24 | 4 | OE4419R | I | argininosuccinate lyase (EC 4.3.2.1) | amino acid metabolism |
25 | 4 | OE6026R | transcription initiation factor TFB | transcription | |
26 | 5 | OE1058R | probable transposase (ISH1) | transposases/ISH proteins | |
27 | 5 | OE1270F | I | glutamate dehydrogenase (EC 1.4.1.-) | amino acid metabolism |
28 | 5 | OE1271F | I | probable fatty-acid--CoA ligase (EC 6.2.1.-) | lipid metabolism |
29 | 5 | OE1352F | I | hypothetical protein | hypothetical protein |
30 | 5 | OE1353F | I | hypothetical protein | hypothetical protein |
31 | 5 | OE1356F | I | conserved hypothetical protein | conserved hypothetical protein |
32 | 5 | OE1447R | I | conserved hypothetical protein | conserved hypothetical protein |
33 | 5 | OE1448R | I | conserved hypothetical protein | conserved hypothetical protein |
34 | 5 | OE1775R | hypothetical protein | hypothetical protein | |
35 | 5 | OE2046F | conserved hypothetical protein | conserved hypothetical protein | |
36 | 5 | OE2492F | conserved protein | conserved hypothetical protein | |
37 | 5 | OE3168R | pyridoxal phosphate-dependent aminotransferase | miscellaneous | |
38 | 5 | OE3554F | carbamoyl-phosphate synthase | amino acid metabolism | |
39 | 5 | OE3612R | chemotactic signal transduction system | signal transduction | |
periplasmic substrate-binding protein basB | |||||
40 | 5 | OE3653R | I | phosphoglycerate mutase (EC 5.4.2.1) | central intermediary metabolism |
41 | 5 | OE3654R | I | hypothetical protein | hypothetical protein |
42 | 5 | OE3925R | thermosome beta chain | cellular processes | |
43 | 5 | OE4122R | thermosome alpha chain | cellular processes | |
44 | 5 | OE4159F | adenosylhomocysteinase (EC 3.3.1.1) | amino acid metabolism | |
45 | 5 | OE4300R | I | hypothetical protein | hypothetical protein |
46 | 5 | OE4301R | I | ABC-type transport system ATP-binding protein | small molecule transport |
47 | 5 | OE4302R | I | ABC-type transport system ATP-binding protein | small molecule transport |
48 | 5 | OE4303R | I | ABC-type transport system permease protein | small molecule transport |
49 | 5 | OE4304R | I | ABC-type transport system permease protein | small molecule transport |
50 | 5 | OE4311F | I | ABC-type transport system substrate-binding protein | small molecule transport |
51 | 5 | OE4316F | I | ABC-type transport system permease protein | small molecule transport |
52 | 5 | OE4318F | I | ABC-type transport system ATP-binding protein | small molecule transport |
53 | 5 | OE4408F | I | phosphoglycerate dehydrogenase (EC 1.1.1.95) | amino acid metabolism |
54 | 5 | OE4410F | I | acyl-CoA thioester hydrolase homolog | conserved hypothetical protein |
55 | 5 | OE4550F | I | ABC-type transport system ATP-binding protein | small molecule transport |
56 | 5 | OE4552F | I | ABC-type transport system permease protein | small molecule transport |
57 | 5 | OE4555F | I | ABC-type transport system permease protein | small molecule transport |
58 | 5 | OE4676F | hypothetical protein | hypothetical protein | |
59 | 5 | OE4688F | conserved protein | conserved hypothetical protein | |
60 | 6 | OE1794R | I | conserved hypothetical protein | conserved hypothetical protein |
61 | 6 | OE1797R | I | transcription regulator sirR | gene regulation |
62 | 7 | OE1674R | I | probable phosphate transport operon protein phoU | transport |
63 | 7 | OE1675R | I | ABC-type transport system ATP-binding protein | small molecule transport |
64 | 7 | OE1676R | I | ABC-type transport system permease protein | small molecule transport |
65 | 7 | OE1678R | I | ABC-type transport system permease protein | small molecule transport |
66 | 7 | OE1679R | I | ABC-type transport system periplasmic binding protein | small molecule transport |
67 | 7 | OE2367F | aldehyde dehydrogenase | miscellaneous | |
68 | 7 | OE2458R | IMP dehydrogenase (EC 1.1.1.205) | nucleotide metabolism | |
69 | 7 | OE2924R | conserved hypothetical protein | conserved hypothetical protein | |
70 | 7 | OE3571R | I | GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) | nucleotide metabolism |
71 | 7 | OE3572R | I | CTP synthase (EC 6.3.4.2) | nucleotide metabolism |
72 | 7 | OE4462F | conserved hypothetical protein | conserved hypothetical protein | |
73 | 7 | OE4466R | DNA repair protein | replication, repair, recombination | |
74 | 7 | OE5160F | glycerol dehydrogenase (EC 1.1.1.6) | miscellaneous | |
75 | 7 | OE5204R | I | arginine ornithine exchanger | small molecule transport |
76 | 7 | OE5205R | I | ornithine carbamoyltransferase (EC 2.1.3.3) | amino acid metabolism |
77 | 7 | OE5206R | I | carbamate kinase (EC 2.7.2.2) | amino acid metabolism |
78 | 7 | OE5208R | I | arginine deiminase (EC 3.5.3.6) | amino acid metabolism |
79 | OE1249R | conserved hypothetical protein | conserved hypothetical protein | ||
80 | OE1302F | lipoate-protein ligase homolog | miscellaneous | ||
81 | OE2703F | probable copper-containing oxidoreductase | miscellaneous | ||
82 | OE2973F | conserved hypothetical protein | conserved hypothetical protein | ||
83 | OE3337F | insertion element protein (ISH2) | transposases/ISH proteins | ||
84 | OE4077F | hypothetical protein | hypothetical protein | ||
85 | OE4380F | cell division control protein cdc6 homolog | cellular processes | ||
86 | OE7065F | I | cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain I | energy metabolism | |
87 | OE7066F | I | cytochrome d ubiquinol oxidase (EC 1.10.3.-) chain II | energy metabolism |