Table 6 NFκB binding sites confirmed by chromatin immunoprecipitation.
Gene | Binding site position | TRANSFAC 8.4 | TRANSFAC 11.1 | Primer Position |
|---|---|---|---|---|
AMIGO2 | -721 | V$NFKAPPAB_01 | -795 | |
BDNF | -223 | V$CREL_01 | V$NFKAPPAB_01 | -586 |
BIRC3/cIAP2 | -92 | V$CREL_01 | -75 | |
-115 | V$NFKAPPAB65_01 | |||
-178 | V$NFKAPPAB65_01 | V$NFKAPPAB_01 | ||
CCL2 | -2602 | V$NFKAPPAB65_01 | V$NFKAPPAB_01 | -2763 |
-2631 | V$NFKAPPAB_01 | V$NFKAPPAB_01 | ||
-2804 | V$CREL_01 | V$NFKAPPAB_01 | ||
CCND1 | -698 | V$CREL_01 | -701 | |
EDN1 | -225 (II) | V$CREL_01 | -241 | |
-293 (II) | V$CREL_01 | |||
-2263 (I) | V$CREL_01 | -2252 | ||
F3 | -188 (II) | V$NFKAPPAB65_01 | V$CREL_01 | -351 |
-482 (II) | V$CREL_01 | V$NFKAPPAB_01 | ||
-2373 (I) | V$NFKAPPAB65_01 | V$NFKAPPAB_01 | -2358 | |
FST | -1335 | V$CREL_01 | -1341 | |
GABPB2 | -13 | V$CREL_01 | -145 | |
G0S2 | -1832 | V$CREL_01 | -1914 | |
IGFBP5 | -176 | V$NFKAPPAB_01 | -135 | |
IL7R | -184 (II) | V$NFKB_C | -184 | |
-2348 (I) | V$NFKAPPAB65_01 | V$NFKAPPAB_01 | -2344 | |
MAT2A | -343 (II) | V$NFKAPPAB_01 | -312 | |
-1249 (I) | V$CREL_01 | -1248 | ||
PLAU | -1598 | V$CREL_01 | -1942 | |
-1838 | V$NFKAPPAB65_01 | |||
-1872 | V$NFKAPPAB65_01 | V$NFKAPPAB_01 | ||
PTX3 | -64 | V$NFKAPPAB_01 | V$NFKAPPAB_01 | -147 |
RGS20 | -179 | V$NFKAPPAB_01 | -345 | |
STC2 | -642 | V$NFKAPPAB65_01 | -587 | |
TNFRSF11B/osteoprotegerin | -128 | V$CREL_01 | -258 |