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Table 11 LPM predicting O-glycosylation probabilities given structural and sequence data

From: Ridge regression estimated linear probability model predictions of O-glycosylation in proteins with structural and sequence data

Variablea

β

|t|

Variablea

β

|t|

Variablea

β

|t|

intercept

-0.1309

9.71

m8N

-0.0921

4.18

p7T

-0.1431

9.24

m1D

0.1878

10.74

m8P

-0.1516

11.05

p7V

-0.1309

8.14

m1L

0.0861

7.26

m8V

-0.2180

12.08

p7Y

0.1290

6.75

m1P

0.7885

11.63

p1A

0.1778

9.83

p8H

0.1164

5.76

m1R

-0.0757

4.66

p1D

0.0915

4.67

p8K

0.0570

3.34

m3A

0.2162

14.35

p1F

0.0858

5.44

p8N

0.1003

5.51

m3C

-0.1315

6.45

p1S

0.0835

5.33

p8Q

0.1493

8.53

m3L

-0.1139

9.49

p1T

0.1673

10.15

pos

0.2821

15.95

m3N

-0.2245

5.86

p1V

0.0669

4.97

ASA_zero

0.8057

12.02

m3T

-0.0881

5.14

p2A

0.0590

2.92

II

0.1649

6.95

m4E

0.1296

5.3

p2H

0.3143

11.32

II´

-0.2828

7.58

m4F

-0.0848

5.56

p2P

0.2652

18.99

Helix

0.1610

14.88

m4N

0.1419

7.3

p2Q

-0.1532

7.89

Beta Bridges

0.6077

6.53

m4R

0.1410

7.04

p2Y

-0.2434

8.12

Beta Hairpin

0.7884

22.3

m4V

-0.0545

4.18

p3N

-0.1615

7.69

Beta Hairpin Strand

-0.1044

9.83

m5D

0.2521

13.74

p3W

-0.1086

3.41

Phi angle

-0.0004

5.31

m5F

-0.1257

6

p4A

0.1629

9.62

 

m5G

0.0700

3.21

p4E

0.1757

12.53

m5I

-0.0981

4.85

p4P

0.1921

13.35

m5Y

-0.1468

6.9

p5C

-0.1957

9.63

m6E

0.0954

7.08

p5E

0.1718

7.98

m6H

-0.1245

4.73

p5H

0.1938

7.88

m6V

0.1528

9.82

p5I

-0.0760

4.33

m6W

0.1166

4.9

p5Q

0.1060

4.93

m6Y

-0.1265

6.31

p5T

0.0722

4.61

m7A

0.1576

10.18

p5Y

-0.1876

7.45

m7E

-0.1132

6.87

p6F

-0.1155

5.43

m7G

-0.0685

4.89

p6G

-0.1696

10.07

m7H

0.2427

11.33

p6M

0.3118

9.57

m7I

0.1222

7.67

p6N

-0.1209

6.67

m7K

0.1538

8.77

p6Q

-0.2641

12.26

m7S

0.0826

4.44

p7A

0.1752

7.04

m8G

0.1032

6.68

p7C

-0.1281

5.86

m8L

-0.1541

10.43

p7E

-0.1161

7.36

m8M

-0.1234

5.34

p7G

-0.0951

5.81

  1. a miα and piα are abbreviations for minus and plus, respectively. Note that the coefficient standard error is |β|÷|t|