Skip to main content

Advertisement

Table 3 Marginal distributions (%) of amino acids by position relative to the S/T-site

From: Ridge regression estimated linear probability model predictions of O-glycosylation in proteins with structural and sequence data

Amino Acid Eight positions to the left/right of the S/T-site for O-GalNAc glycosylated sequences
-8 -7 -6 -5 -4 -3 -2 -1 +1 +2 +3 +4 +5 +6 +7 +8
A 7.7 7.2 7.0 7.2 6.6 7.0 9.1 8.5 7.7 10.2 7.9 6.8 8.0 8.2 7.9 7.8
C 0.9 0.8 0.9 0.4 0.8 0.4 0.4 0.1 0.9 0.1 0.3 0.4 0.7 0.6 0.7 1.4
D 4.3 4.5 4.1 3.8 4.1 3.4 4.2 1.3 3.9 4.0 4.3 3.7 5.2 4.6 4.6 5.0
E 6.4 6.2 6.6 6.8 6.4 8.3 6.6 4.4 7.0 6.2 5.2 7.0 7.8 6.6 7.1 8.0
F 2.4 2.4 2.3 2.2 2.3 2.4 2.7 2.8 1.6 2.0 2.7 2.0 2.3 2.3 2.0 2.2
G 6.9 6.7 6.9 6.8 6.2 5.2 7.6 5.3 5.6 7.2 6.0 6.8 6.1 7.6 7.8 6.8
H 3.6 3.8 2.9 4.3 4.5 3.6 3.6 4.5 3.8 4.0 2.8 3.5 3.5 3.2 3.4 3.0
I 2.9 3.2 2.7 3.0 3.6 3.4 3.0 3.2 2.4 2.7 2.3 2.7 3.2 2.1 2.0 2.3
K 5.7 5.4 5.7 5.8 5.1 5.6 5.5 3.3 4.6 5.6 3.6 6.0 5.3 5.6 6.6 7.0
L 6.8 7.1 6.7 7.2 6.8 8.0 7.1 5.6 7.5 7.1 6.1 6.7 7.2 7.7 7.1 7.0
M 1.7 1.3 1.0 0.8 0.8 1.0 1.1 0.9 0.7 1.0 0.9 1.0 1.1 1.0 1.1 1.1
N 2.1 2.0 2.5 2.4 2.1 2.0 1.2 1.7 1.7 2.6 2.1 2.0 2.2 2.2 2.3 2.6
P 8.3 9.6 9.4 10.2 9.4 11.0 11.5 15.8 11.6 12.2 17.8 12.3 9.7 10.6 8.9 8.2
Q 4.7 4.3 4.4 4.4 4.7 4.2 4.5 3.9 4.9 3.9 4.2 3.9 3.6 4.0 4.9 4.2
R 7.5 6.5 7.5 7.2 7.5 6.8 6.2 5.1 5.9 5.8 4.7 6.5 6.9 7.5 6.7 6.8
S 9.4 10.6 11.5 10.1 11.8 10.3 9.0 10.3 10.4 11.3 10.8 10.3 9.6 10.1 10.5 9.1
T 11.5 10.8 10.6 10.2 10.1 8.3 8.0 11.2 12.0 6.8 10.9 10.2 9.5 9.7 10.0 10.4
V 5.2 5.8 5.4 5.2 5.5 6.7 6.0 9.7 6.2 5.1 5.4 6.1 6.0 4.5 4.9 4.8
W 1.0 0.6 0.5 0.8 0.5 0.9 0.8 0.5 0.6 0.7 0.5 1.0 0.6 0.5 0.5 1.3
Y 1.3 1.4 1.2 1.4 1.5 1.6 1.8 1.7 1.2 1.5 1.7 1.4 1.4 1.5 1.3 1.3