Table 1 Top DaliLite results using CcmB as a query against the PDB25 dataset
From: ECOD: identification of distant homology among multidomain and transmembrane domain proteins
Query | Hit | Z-score | Protein | Old X-group |
|---|---|---|---|---|
CcmB | 4mlb-B | 8.8 | PF0708 | MatE transporter |
CcmB | 2yvx-A | 8.2 | MG2+ TRANSPORTER MGTE | MatE transporter |
CcmB | 5xjy-A | 8 | ATP-BINDING CASSETTE SUBFAMILY A MEMBER 1 | Type II ABC exporter |
CcmB | 6an7-C | 8 | ABC TRANSPORTER | Type II ABC exporter |
CcmB | 5yck-A | 7.2 | MULTI DRUG EFFLUX TRANSPORTER | MatE transporter |
CcmB | 5do7-A | 7.2 | ATP-BINDING CASSETTE SUBFAMILY G MEMBER 5 | Type II ABC exporter |
5x5yF | 5x5y-F | 46.6 | ABC transporter LptB2FG | Type II ABC exporter |
5x5yF | 5l75-G | 23.3 | LIPOPOLYSACCHARIDE ABC TRANSPORTER | Type II ABC exporter |
5x5yF | 5l75-F | 23 | LIPOPOLYSACCHARIDE ABC TRANSPORTER | Type II ABC exporter |
5x5yF | 5x5y-G | 19.6 | ABC transporter LptB2FG | Type II ABC exporter |
5x5yF | 5a63-C | 9.5 | NICASTRIN | Type II ABC exporter |
5x5yF | 4mlb-B | 8.1 | PF0708 | MatE transporter |
5x5yF | 5xjy-A | 8.1 | ATP-BINDING CASSETTE SUBFAMILY A MEMBER 1 | Type II ABC exporter |
5x5yF | 5yck-A | 7.7 | MULTI DRUG EFFLUX TRANSPORTER | MatE transporter |
5x5yF | 3mkt-A | 7.6 | MULTI ANTIMICROBIAL EXTRUSION PROTEIN | MatE transporter |
5x5yF | 5do7-A | 7.5 | ATP-BINDING CASSETTE SUBFAMILY G MEMBER 5 | Type II ABC exporter |
4mlbB | 4mlb-B | 70.4 | PF0708 | MatE transporter |
4mlbB | 5yck-A | 41.7 | MULTI DRUG EFFLUX TRANSPORTER | MatE transporter |
4mlbB | 3mkt-A | 36.2 | MULTI ANTIMICROBIAL EXTRUSION PROTEIN | MatE transporter |
4mlbB | 6cc4-A | 14.2 | SOLUBLE CYTOCHROME B562, LIPID II FLIPPASE MURJ C | MatE transporter |
4mlbB | 5l75-F | 8 | LIPOPOLYSACCHARIDE ABC TRANSPORTER | Type II ABC exporter |
4mlbB | 5x5y-F | 7.3 | ABC transporter LptB2FG | Type II ABC exporter |
4mlbB | 5x5y-G | 7.1 | ABC transporter LptB2FG | Type II ABC exporter |