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Table 1 MSE values from the heterogeneity and sparsity study

From: IMPARO: inferring microbial interactions through parameter optimisation

σ=1

P

 

p=0.2

p=0.4

p=0.6

p=0.8

p=1.0

H

α=0.2

0.05

1.32

1.36

2.55

1.99

 

α=0.4

0.61

0.63

1.36

0.66

1.02

 

α=0.6

0.42

0.57

1.54

1.98

1.81

 

α=0.8

0.09

0.57

1.14

0.79

1.51

 

α=1.0

0.34

0.28

0.71

0.73

1.28

  1. Heterogeneity and sparsity were varied—through varying α and p respectively—to investigate how IMPARO responded to microbial samples of varying nature. Mean Squared Error(MSE) indicates how far the inference is from the ground truth