Database/Tools | Web Link | Purpose | References |
---|---|---|---|
NCBI | Accession of Data | – | |
T2D@ZJU | Diabetes associated genes retrieval | [18] | |
DAPD | Retrieval of proteins | [19] | |
ToxinPred & PredSTP | Prediction of toxic peptides | ||
UniProt | Screening of Diabetic proteins | [22] | |
Compare Two Lists | Comparison | [23]. | |
SPpred | Solubility/hydrophilicity determination | – | |
PROTPARAM | Amino Acid composition | [24] | |
CELLO | Subcellular Localization Prediction | [25] | |
PROPRED I | Prediction of T-Cell epitopes | [24] | |
HADDOCK 2.2 | Docking of epitopes | [26] | |
IEDB (NetChop) | Proteasomal cleavage prediction | [27]. | |
IEDB | Epitope Conservancy Analysis | [28] | |
PEPFOLD | http://bioserv.rpbs.univ-paris-diderot.fr/services/PEP-FOLD/ | 3D Modelling of Epitopes | [29] |
DAVID Tool | Functional Annotation | [30] | |
HAPPI | Interactomic analysis | [31] | |
STRING | Interactomic analysis | [32]. | |
Cytoscape | Protein-protein interaction | [33] | |
MOE | Epitopes binding energy | – | |
ITASSER | 3D Model generation | ||
Chimera | Visualization of proteins | [37] | |
FUNRICH | Gene enrichment analysis | [38] | |
ERRAT | Error in model estimation | [39] | |
QMean | Quality of model | ||
Rampage Analysis | Protein Quality | [42] | |
3D Refine | Refinement of polyvalent model | ||
Antigen Pro | Antigenicity | [46] | |
Vaxijen | Antigenicity | ||
AlgPred | Allergenicity | – | |
Sol Pro | http://scratch.proteomics.ics.uci.edu/explanation.html#SOLpro | Solubility of proteins | [46] |
Expasy | Molecular Weight prediction | [24] |