|
NCBI
|
https://www.ncbi.nlm.nih.gov/
|
Accession of Data
|
–
|
|
T2D@ZJU
|
http://pharminfo.zju.edu.cn/t2d
|
Diabetes associated genes retrieval
|
[18]
|
|
DAPD
|
http://mkarthikeyan.bioinfoau.org/dapd/
|
Retrieval of proteins
|
[19]
|
|
ToxinPred & PredSTP
|
https://webs.iiitd.edu.in/raghava/toxinpred/index.html
|
Prediction of toxic peptides
|
[20, 21]
|
|
UniProt
|
http://www.uniprot.org
|
Screening of Diabetic proteins
|
[22]
|
|
Compare Two Lists
|
http://jura.wi.mit.edu/bioc/tools/compare.php
|
Comparison
|
[23].
|
|
SPpred
|
http://crdd.osdd.net:8081/sppred/submit.jsp
|
Solubility/hydrophilicity determination
|
–
|
|
PROTPARAM
|
http://web.expasy.org/protparam/
|
Amino Acid composition
|
[24]
|
|
CELLO
|
http://cello.life.nctu.edu.tw/
|
Subcellular Localization Prediction
|
[25]
|
|
PROPRED I
|
http://crdd.osdd.net/raghava/propred1/
|
Prediction of T-Cell epitopes
|
[24]
|
|
HADDOCK 2.2
|
https://haddock.science.uu.nl/
|
Docking of epitopes
|
[26]
|
|
IEDB (NetChop)
|
http://tools.iedb.org/netchop/result/
|
Proteasomal cleavage prediction
|
[27].
|
|
IEDB
|
http://tools.iedb.org/conservancy/
|
Epitope Conservancy Analysis
|
[28]
|
|
PEPFOLD
|
http://bioserv.rpbs.univ-paris-diderot.fr/services/PEP-FOLD/
|
3D Modelling of Epitopes
|
[29]
|
|
DAVID Tool
|
https://david.ncifcrf.gov/home.jsp
|
Functional Annotation
|
[30]
|
|
HAPPI
|
http://discovery.informatics.uab.edu/HAPPI/
|
Interactomic analysis
|
[31]
|
|
STRING
|
https://string-db.org/
|
Interactomic analysis
|
[32].
|
|
Cytoscape
|
http://www.cytoscape.org/
|
Protein-protein interaction
|
[33]
|
|
MOE
|
https://www.chemcomp.com/
|
Epitopes binding energy
|
–
|
|
ITASSER
|
https://zhanglab.ccmb.med.umich.edu/I-TASSER/
|
3D Model generation
|
[34,35,36]
|
|
Chimera
|
https://www.cgl.ucsf.edu/chimera/
|
Visualization of proteins
|
[37]
|
|
FUNRICH
|
http://www.funrich.org/
|
Gene enrichment analysis
|
[38]
|
|
ERRAT
|
http://servicesn.mbi.ucla.edu/ERRAT/
|
Error in model estimation
|
[39]
|
|
QMean
|
https://swissmodel.expasy.org/qmean/
|
Quality of model
|
[40, 41]
|
|
Rampage Analysis
|
http://mordred.bioc.cam.ac.uk/~rapper/rampage.php
|
Protein Quality
|
[42]
|
|
3D Refine
|
http://sysbio.rnet.missouri.edu/3Drefine/
|
Refinement of polyvalent model
|
[43,44,45]
|
|
Antigen Pro
|
http://scratch.proteomics.ics.uci.edu/
|
Antigenicity
|
[46]
|
|
Vaxijen
|
http://www.ddg-pharmfac.net/vaxijen/VaxiJen/
|
Antigenicity
|
[47,48,49]
|
|
AlgPred
|
http://crdd.osdd.net/raghava/algpred/submission.html
|
Allergenicity
|
–
|
|
Sol Pro
|
http://scratch.proteomics.ics.uci.edu/explanation.html#SOLpro
|
Solubility of proteins
|
[46]
|
|
Expasy
|
http://web.expasy.org/compute_pi/
|
Molecular Weight prediction
|
[24]
|
