TY - JOUR AU - Schwebke, J. R. AU - Hobbs, M. M. AU - Taylor, S. N. AU - Sena, A. C. AU - Catania, M. G. AU - Weinbaum, B. S. AU - Johnson, A. D. AU - Getman, D. K. AU - Gaydos, C. A. PY - 2011 DA - 2011// TI - Molecular testing for Trichomonas vaginalis in women: results from a prospective US clinical trial JO - J Clin Microbiol VL - 49 UR - https://doi.org/10.1128/JCM.01291-11 DO - 10.1128/JCM.01291-11 ID - Schwebke2011 ER - TY - JOUR AU - Carlton, J. M. AU - Hirt, R. P. AU - Silva, J. C. AU - Delcher, A. L. AU - Schatz, M. AU - Zhao, Q. AU - Wortman, J. R. AU - Bidwell, S. L. AU - Alsmark, U. C. M. AU - Besteiro, S. PY - 2007 DA - 2007// TI - Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JO - Science VL - 315 UR - https://doi.org/10.1126/science.1132894 DO - 10.1126/science.1132894 ID - Carlton2007 ER - TY - JOUR AU - Conrad, M. D. AU - Bradic, M. AU - Warring, S. D. AU - Gorman, A. W. AU - Carlton, J. M. PY - 2013 DA - 2013// TI - Getting trichy: tools and approaches to interrogating Trichomonas vaginalis in a post-genome world JO - Trends Parasitol VL - 29 UR - https://doi.org/10.1016/j.pt.2012.10.004 DO - 10.1016/j.pt.2012.10.004 ID - Conrad2013 ER - TY - JOUR AU - Aurrecoechea, C. AU - Brestelli, J. AU - Brunk, B. P. AU - Carlton, J. M. AU - Dommer, J. AU - Fischer, S. AU - Gajria, B. AU - Gao, X. AU - Gingle, A. AU - Grant, G. PY - 2008 DA - 2008// TI - GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis JO - Nucleic Acids Res VL - 37 ID - Aurrecoechea2008 ER - TY - JOUR AU - Wang, S. E. AU - Amir, A. S. AU - Nguyen, T. AU - Poole, A. M. AU - Simoes-Barbosa, A. PY - 2018 DA - 2018// TI - Spliceosomal introns in Trichomonas vaginalis revisited JO - Parasit Vectors VL - 11 UR - https://doi.org/10.1186/s13071-018-3196-7 DO - 10.1186/s13071-018-3196-7 ID - Wang2018 ER - TY - JOUR AU - Li, G. -. W. PY - 2015 DA - 2015// TI - How do bacteria tune translation efficiency? JO - Curr Opin Microbiol VL - 24 UR - https://doi.org/10.1016/j.mib.2015.01.001 DO - 10.1016/j.mib.2015.01.001 ID - Li2015 ER - TY - JOUR AU - Welch, M. AU - Govindarajan, S. AU - Ness, J. E. AU - Villalobos, A. AU - Gurney, A. AU - Minshull, J. AU - Gustafsson, C. PY - 2009 DA - 2009// TI - Design parameters to control synthetic gene expression in Escherichia coli JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0007002 DO - 10.1371/journal.pone.0007002 ID - Welch2009 ER - TY - JOUR AU - Sousa Abreu, R. AU - Penalva, L. O. AU - Marcotte, E. M. AU - Vogel, C. PY - 2009 DA - 2009// TI - Global signatures of protein and mRNA expression levels JO - Mol BioSyst VL - 5 ID - Sousa Abreu2009 ER - TY - JOUR AU - Vogel, C. AU - Marcotte, E. M. PY - 2012 DA - 2012// TI - Insights into the regulation of protein abundance from proteomic and transcriptomic analyses JO - Nat Rev Genet VL - 13 UR - https://doi.org/10.1038/nrg3185 DO - 10.1038/nrg3185 ID - Vogel2012 ER - TY - JOUR AU - Maier, T. AU - Schmidt, A. AU - Güell, M. AU - Kühner, S. AU - Gavin, A. C. AU - Aebersold, R. AU - Serrano, L. PY - 2011 DA - 2011// TI - Quantification of mRNA and protein and integration with protein turnover in a bacterium JO - Mol Syst Biol VL - 7 UR - https://doi.org/10.1038/msb.2011.38 DO - 10.1038/msb.2011.38 ID - Maier2011 ER - TY - JOUR AU - Lu, P. AU - Vogel, C. AU - Wang, R. AU - Yao, X. AU - Marcotte, E. M. PY - 2007 DA - 2007// TI - Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt1270 DO - 10.1038/nbt1270 ID - Lu2007 ER - TY - JOUR AU - Chen, W. -. H. AU - Noort, V. AU - Lluch-Senar, M. AU - Hennrich, M. L. AU - Wodke, J. A. AU - Yus, E. AU - Alibés, A. AU - Roma, G. AU - Mende, D. R. AU - Pesavento, C. PY - 2016 DA - 2016// TI - Integration of multi-omics data of a genome-reduced bacterium: prevalence of post-transcriptional regulation and its correlation with protein abundances JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw004 DO - 10.1093/nar/gkw004 ID - Chen2016 ER - TY - JOUR AU - Gingold, H. AU - Pilpel, Y. PY - 2011 DA - 2011// TI - Determinants of translation efficiency and accuracy JO - Mol Syst Biol VL - 7 UR - https://doi.org/10.1038/msb.2011.14 DO - 10.1038/msb.2011.14 ID - Gingold2011 ER - TY - JOUR AU - Kudla, G. AU - Murray, A. W. AU - Tollervey, D. AU - Plotkin, J. B. PY - 2009 DA - 2009// TI - Coding-sequence determinants of gene expression in Escherichia coli JO - Science VL - 324 UR - https://doi.org/10.1126/science.1170160 DO - 10.1126/science.1170160 ID - Kudla2009 ER - TY - JOUR AU - Allert, M. AU - Cox, J. C. AU - Hellinga, H. W. PY - 2010 DA - 2010// TI - Multifactorial determinants of protein expression in prokaryotic open reading frames JO - J Mol Biol VL - 402 UR - https://doi.org/10.1016/j.jmb.2010.08.010 DO - 10.1016/j.jmb.2010.08.010 ID - Allert2010 ER - TY - JOUR AU - Cambray, G. AU - Guimaraes, J. C. AU - Arkin, A. P. PY - 2018 DA - 2018// TI - Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli JO - Nat Biotechnol VL - 36 UR - https://doi.org/10.1038/nbt.4238 DO - 10.1038/nbt.4238 ID - Cambray2018 ER - TY - JOUR AU - Tuller, T. AU - Waldman, Y. Y. AU - Kupiec, M. AU - Ruppin, E. PY - 2010 DA - 2010// TI - Translation efficiency is determined by both codon bias and folding energy JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.0909910107 DO - 10.1073/pnas.0909910107 ID - Tuller2010 ER - TY - JOUR AU - Frumkin, I. AU - Lajoie, M. J. AU - Gregg, C. J. AU - Hornung, G. AU - Church, G. M. AU - Pilpel, Y. PY - 2018 DA - 2018// TI - Codon usage of highly expressed genes affects proteome-wide translation efficiency JO - Proc Natl Acad Sci VL - 115 UR - https://doi.org/10.1073/pnas.1719375115 DO - 10.1073/pnas.1719375115 ID - Frumkin2018 ER - TY - JOUR AU - Umu, S. U. AU - Poole, A. M. AU - Dobson, R. C. AU - Gardner, P. P. PY - 2016 DA - 2016// TI - Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea JO - eLife VL - 5 UR - https://doi.org/10.7554/eLife.13479 DO - 10.7554/eLife.13479 ID - Umu2016 ER - TY - JOUR AU - Lim, C. S. AU - Wardell, S. J. T. AU - Kleffmann, T. AU - Brown, C. M. PY - 2018 DA - 2018// TI - The exon-intron gene structure upstream of the initiation codon predicts translation efficiency JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky282 DO - 10.1093/nar/gky282 ID - Lim2018 ER - TY - JOUR AU - Crick, F. H. PY - 1958 DA - 1958// TI - On protein synthesis JO - Symp Soc Exp Biol VL - 1958 ID - Crick1958 ER - TY - JOUR AU - Withers, M. AU - Wernisch, L. AU - Reis, M. PY - 2006 DA - 2006// TI - Archaeology and evolution of transfer RNA genes in the Escherichia coli genome JO - RNA VL - 12 UR - https://doi.org/10.1261/rna.2272306 DO - 10.1261/rna.2272306 ID - Withers2006 ER - TY - JOUR AU - Gonos, E. S. AU - Goddard, J. P. PY - 1990 DA - 1990// TI - Human tRNAGlu genes: their copy number and organisation JO - FEBS Lett VL - 276 UR - https://doi.org/10.1016/0014-5793(90)80527-P DO - 10.1016/0014-5793(90)80527-P ID - Gonos1990 ER - TY - JOUR AU - Kanaya, S. AU - Yamada, Y. AU - Kudo, Y. AU - Ikemura, T. PY - 1999 DA - 1999// TI - Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis JO - Gene VL - 238 UR - https://doi.org/10.1016/S0378-1119(99)00225-5 DO - 10.1016/S0378-1119(99)00225-5 ID - Kanaya1999 ER - TY - JOUR AU - Elf, J. AU - Nilsson, D. AU - Tenson, T. AU - Ehrenberg, M. PY - 2003 DA - 2003// TI - Selective charging of tRNA isoacceptors explains patterns of codon usage JO - Science VL - 300 UR - https://doi.org/10.1126/science.1083811 DO - 10.1126/science.1083811 ID - Elf2003 ER - TY - JOUR AU - Shabalina, S. A. AU - Spiridonov, N. A. AU - Kashina, A. PY - 2013 DA - 2013// TI - Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks1205 DO - 10.1093/nar/gks1205 ID - Shabalina2013 ER - TY - JOUR AU - Bennetzen, J. L. AU - Hall, B. D. PY - 1982 DA - 1982// TI - Codon selection in yeast JO - J Biol Chem VL - 257 UR - https://doi.org/10.1016/S0021-9258(19)81068-2 DO - 10.1016/S0021-9258(19)81068-2 ID - Bennetzen1982 ER - TY - JOUR AU - Gouy, M. AU - Gautier, C. PY - 1982 DA - 1982// TI - Codon usage in bacteria: correlation with gene expressivity JO - Nucleic Acids Res VL - 10 UR - https://doi.org/10.1093/nar/10.22.7055 DO - 10.1093/nar/10.22.7055 ID - Gouy1982 ER - TY - JOUR AU - Sharp, P. M. AU - Li, W. -. H. PY - 1987 DA - 1987// TI - The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications JO - Nucleic Acids Res VL - 15 UR - https://doi.org/10.1093/nar/15.3.1281 DO - 10.1093/nar/15.3.1281 ID - Sharp1987 ER - TY - STD TI - Nakamura Y, Gojobori T, Ikemura T. Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res. 2000;28(1):292–2. ID - ref30 ER - TY - JOUR AU - Tinoco, I. AU - Bustamante, C. PY - 1999 DA - 1999// TI - How RNA folds JO - J Mol Biol VL - 293 UR - https://doi.org/10.1006/jmbi.1999.3001 DO - 10.1006/jmbi.1999.3001 ID - Tinoco1999 ER - TY - JOUR AU - Mortimer, S. A. AU - Kidwell, M. A. AU - Doudna, J. A. PY - 2014 DA - 2014// TI - Insights into RNA structure and function from genome-wide studies JO - Nat Rev Genet VL - 15 UR - https://doi.org/10.1038/nrg3681 DO - 10.1038/nrg3681 ID - Mortimer2014 ER - TY - JOUR AU - Wan, Y. AU - Kertesz, M. AU - Spitale, R. C. AU - Segal, E. AU - Chang, H. Y. PY - 2011 DA - 2011// TI - Understanding the transcriptome through RNA structure JO - Nat Rev Genet VL - 12 UR - https://doi.org/10.1038/nrg3049 DO - 10.1038/nrg3049 ID - Wan2011 ER - TY - JOUR AU - Li, F. AU - Zheng, Q. AU - Vandivier, L. E. AU - Willmann, M. R. AU - Chen, Y. AU - Gregory, B. D. PY - 2012 DA - 2012// TI - Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome JO - Plant Cell VL - 24 UR - https://doi.org/10.1105/tpc.112.104232 DO - 10.1105/tpc.112.104232 ID - Li2012 ER - TY - JOUR AU - Zheng, Q. AU - Ryvkin, P. AU - Li, F. AU - Dragomir, I. AU - Valladares, O. AU - Yang, J. AU - Cao, K. AU - Wang, L. -. S. AU - Gregory, B. D. PY - 2010 DA - 2010// TI - Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis JO - PLoS Genet VL - 6 UR - https://doi.org/10.1371/journal.pgen.1001141 DO - 10.1371/journal.pgen.1001141 ID - Zheng2010 ER - TY - JOUR AU - Li, F. AU - Zheng, Q. AU - Ryvkin, P. AU - Dragomir, I. AU - Desai, Y. AU - Aiyer, S. AU - Valladares, O. AU - Yang, J. AU - Bambina, S. AU - Sabin, L. R. PY - 2012 DA - 2012// TI - Global analysis of RNA secondary structure in two metazoans JO - Cell Rep VL - 1 UR - https://doi.org/10.1016/j.celrep.2011.10.002 DO - 10.1016/j.celrep.2011.10.002 ID - Li2012 ER - TY - JOUR AU - Wan, Y. AU - Qu, K. AU - Zhang, Q. C. AU - Flynn, R. A. AU - Manor, O. AU - Ouyang, Z. AU - Zhang, J. AU - Spitale, R. C. AU - Snyder, M. P. AU - Segal, E. PY - 2014 DA - 2014// TI - Landscape and variation of RNA secondary structure across the human transcriptome JO - Nature VL - 505 UR - https://doi.org/10.1038/nature12946 DO - 10.1038/nature12946 ID - Wan2014 ER - TY - JOUR AU - Shabalina, S. A. AU - Ogurtsov, A. Y. AU - Spiridonov, N. A. PY - 2006 DA - 2006// TI - A periodic pattern of mRNA secondary structure created by the genetic code JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl287 DO - 10.1093/nar/gkl287 ID - Shabalina2006 ER - TY - JOUR AU - Dana, A. AU - Tuller, T. PY - 2012 DA - 2012// TI - Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells JO - PLoS Comput Biol VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002755 DO - 10.1371/journal.pcbi.1002755 ID - Dana2012 ER - TY - JOUR AU - Zuker, M. PY - 2003 DA - 2003// TI - Mfold web server for nucleic acid folding and hybridization prediction JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg595 DO - 10.1093/nar/gkg595 ID - Zuker2003 ER - TY - JOUR AU - Mathews, D. H. AU - Turner, D. H. PY - 2006 DA - 2006// TI - Prediction of RNA secondary structure by free energy minimization JO - Curr Opin Struct Biol VL - 16 UR - https://doi.org/10.1016/j.sbi.2006.05.010 DO - 10.1016/j.sbi.2006.05.010 ID - Mathews2006 ER - TY - JOUR AU - Gruber, A. R. AU - Lorenz, R. AU - Bernhart, S. H. AU - Neuböck, R. AU - Hofacker, I. L. PY - 2008 DA - 2008// TI - The Vienna RNA websuite JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn188 DO - 10.1093/nar/gkn188 ID - Gruber2008 ER - TY - JOUR AU - Markham, N. R. AU - Zuker, M. PY - 2005 DA - 2005// TI - DINAMelt web server for nucleic acid melting prediction JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki591 DO - 10.1093/nar/gki591 ID - Markham2005 ER - TY - JOUR AU - Lorenz, R. AU - Bernhart, S. H. AU - zu Siederdissen, C. H. AU - Tafer, H. AU - Flamm, C. AU - Stadler, P. F. AU - Hofacker, I. L. PY - 2011 DA - 2011// TI - ViennaRNA Package 2.0 JO - Algorithms Mol Biol VL - 6 UR - https://doi.org/10.1186/1748-7188-6-26 DO - 10.1186/1748-7188-6-26 ID - Lorenz2011 ER - TY - JOUR AU - Gu, W. AU - Xu, Y. AU - Xie, X. AU - Wang, T. AU - Ko, J. -. H. AU - Zhou, T. PY - 2014 DA - 2014// TI - The role of RNA structure at 5′ untranslated region in microRNA-mediated gene regulation JO - RNA VL - 20 UR - https://doi.org/10.1261/rna.044792.114 DO - 10.1261/rna.044792.114 ID - Gu2014 ER - TY - JOUR AU - Smith, A. J. AU - Chudnovsky, L. AU - Simoes-Barbosa, A. AU - Delgadillo-Correa, M. G. AU - Jonsson, Z. O. AU - Wohlschlegel, J. A. AU - Johnson, P. J. PY - 2011 DA - 2011// TI - Novel core promoter elements and a cognate transcription factor in the divergent unicellular eukaryote Trichomonas vaginalis JO - Mol Cell Biol VL - 31 UR - https://doi.org/10.1128/MCB.00745-10 DO - 10.1128/MCB.00745-10 ID - Smith2011 ER - TY - JOUR AU - Wang, S. E. AU - Brooks, A. E. AU - Cann, B. AU - Simoes-Barbosa, A. PY - 2017 DA - 2017// TI - The fluorescent protein iLOV outperforms eGFP as a reporter gene in the microaerophilic protozoan Trichomonas vaginalis JO - Mol Biochem Parasitol VL - 216 UR - https://doi.org/10.1016/j.molbiopara.2017.06.003 DO - 10.1016/j.molbiopara.2017.06.003 ID - Wang2017 ER - TY - JOUR AU - Liston, D. R. AU - Johnson, P. J. PY - 1999 DA - 1999// TI - Analysis of a ubiquitous promoter element in a primitive eukaryote: early evolution of the initiator element JO - Mol Cell Biol VL - 19 UR - https://doi.org/10.1128/MCB.19.3.2380 DO - 10.1128/MCB.19.3.2380 ID - Liston1999 ER - TY - JOUR AU - Delgadillo, M. G. AU - Liston, D. R. AU - Niazi, K. AU - Johnson, P. J. PY - 1997 DA - 1997// TI - Transient and selectable transformation of the parasitic protist Trichomonas vaginalis JO - Proc Natl Acad Sci VL - 94 UR - https://doi.org/10.1073/pnas.94.9.4716 DO - 10.1073/pnas.94.9.4716 ID - Delgadillo1997 ER - TY - JOUR AU - Valentina, G. AU - Annarita, M. AU - Anna Maria, B. AU - Anne, B. AU - Hiroaki, K. AU - Pier Carlo, M. AU - Stefano, B. PY - 2008 DA - 2008// TI - Eukaryotic initiation factor 6 is rate-limiting in translation, growth and transformation JO - Nature VL - 455 UR - https://doi.org/10.1038/nature07267 DO - 10.1038/nature07267 ID - Valentina2008 ER - TY - CHAP AU - Fakim, H. AU - Fabian, M. R. PY - 2019 DA - 2019// TI - Communication is key: 5′–3′ interactions that regulate mRNA translation and turnover BT - The biology of mRNA: structure and function PB - Springer CY - Berlin UR - https://doi.org/10.1007/978-3-030-31434-7_6 DO - 10.1007/978-3-030-31434-7_6 ID - Fakim2019 ER - TY - JOUR AU - Thompson, M. K. AU - Gilbert, W. V. PY - 2017 DA - 2017// TI - mRNA length-sensing in eukaryotic translation: reconsidering the “closed loop” and its implications for translational control JO - Curr Genet VL - 63 UR - https://doi.org/10.1007/s00294-016-0674-3 DO - 10.1007/s00294-016-0674-3 ID - Thompson2017 ER - TY - JOUR AU - Lawless, C. AU - Pearson, R. D. AU - Selley, J. N. AU - Smirnova, J. B. AU - Grant, C. M. AU - Ashe, M. P. AU - Pavitt, G. D. AU - Hubbard, S. J. PY - 2009 DA - 2009// TI - Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-7 DO - 10.1186/1471-2164-10-7 ID - Lawless2009 ER - TY - JOUR AU - Calvo, S. E. AU - Pagliarini, D. J. AU - Mootha, V. K. PY - 2009 DA - 2009// TI - Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans JO - Proc Natl Acad Sci VL - 106 UR - https://doi.org/10.1073/pnas.0810916106 DO - 10.1073/pnas.0810916106 ID - Calvo2009 ER - TY - JOUR AU - Wethmar, K. PY - 2014 DA - 2014// TI - The regulatory potential of upstream open reading frames in eukaryotic gene expression JO - Wiley Interdiscip Rev RNA VL - 5 UR - https://doi.org/10.1002/wrna.1245 DO - 10.1002/wrna.1245 ID - Wethmar2014 ER - TY - JOUR AU - Zydowicz-Machtel, P. AU - Swiatkowska, A. AU - Popenda, Ł. AU - Gorska, A. AU - Ciesiołka, J. PY - 2018 DA - 2018// TI - Variants of the 5′-terminal region of p53 mRNA influence the ribosomal scanning and translation efficiency JO - Sci Rep VL - 8 UR - https://doi.org/10.1038/s41598-018-20010-2 DO - 10.1038/s41598-018-20010-2 ID - Zydowicz-Machtel2018 ER - TY - JOUR AU - Torres-Romero, J. AU - Arroyo, R. PY - 2009 DA - 2009// TI - Responsiveness of Trichomonas vaginalis to iron concentrations: evidence for a post-transcriptional iron regulation by an IRE/IRP-like system JO - Infect Genet Evol VL - 9 UR - https://doi.org/10.1016/j.meegid.2009.06.003 DO - 10.1016/j.meegid.2009.06.003 ID - Torres-Romero2009 ER - TY - JOUR AU - Figueroa-Angulo, E. E. AU - Calla-Choque, J. S. AU - Mancilla-Olea, M. I. AU - Arroyo, R. PY - 2015 DA - 2015// TI - RNA-binding proteins in Trichomonas vaginalis: atypical multifunctional proteins JO - Biomolecules VL - 5 UR - https://doi.org/10.3390/biom5043354 DO - 10.3390/biom5043354 ID - Figueroa-Angulo2015 ER - TY - JOUR AU - Lei, L. AU - Wang, C. C. PY - 2004 DA - 2004// TI - Capped mRNA with a single nucleotide leader is optimally translated in a primitive eukaryote, Giardia lamblia JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M309879200 DO - 10.1074/jbc.M309879200 ID - Lei2004 ER - TY - JOUR AU - Puigbò, P. AU - Bravo, I. G. AU - Garcia-Vallve, S. PY - 2008 DA - 2008// TI - CAIcal: a combined set of tools to assess codon usage adaptation JO - Biol Direct VL - 3 UR - https://doi.org/10.1186/1745-6150-3-38 DO - 10.1186/1745-6150-3-38 ID - Puigbò2008 ER - TY - JOUR AU - Schumacher, M. A. AU - Lau, A. O. AU - Johnson, P. J. PY - 2003 DA - 2003// TI - Structural basis of core promoter recognition in a primitive eukaryote JO - Cell VL - 115 UR - https://doi.org/10.1016/S0092-8674(03)00887-0 DO - 10.1016/S0092-8674(03)00887-0 ID - Schumacher2003 ER - TY - JOUR AU - Edgar, R. C. PY - 2010 DA - 2010// TI - Search and clustering orders of magnitude faster than BLAST JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq461 DO - 10.1093/bioinformatics/btq461 ID - Edgar2010 ER - TY - JOUR AU - Rice, P. AU - Longden, I. AU - Bleasby, A. PY - 2000 DA - 2000// TI - EMBOSS: the European molecular biology open software suite JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02024-2 DO - 10.1016/S0168-9525(00)02024-2 ID - Rice2000 ER - TY - JOUR AU - Puigbo, P. AU - Guzman, E. AU - Romeu, A. AU - Garcia-Vallve, S. PY - 2007 DA - 2007// TI - OPTIMIZER: a web server for optimizing the codon usage of DNA sequences JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm219 DO - 10.1093/nar/gkm219 ID - Puigbo2007 ER -