Tissue | Position | Gene | Primer name | Oligo sequence | Amplicon size | Probe name | Probe sequence | Tm probe | Fluorophore | Reference |
---|---|---|---|---|---|---|---|---|---|---|
All | LOC_Os01g70380 | Serine palmitoyltransferase | Serine_F | TTGCCGTCGATAATCCTGAC | 196 | pSerine | CCTCGTTCGTTCGTCGCTGACGGC | 64.2 | HEX | Sato et al. 2013 [15] |
Serine_R | GAGGAAGAGGTCGTCAATGG | |||||||||
TFIIE (LOC_Os10g25770) | Transcription factor 2E | TFIIE_F | TTAGCTGTGTTGGTCATGGG | 161 | pTFIIE | CGGAAGAGCTGCTTCAGGTCATCGTCG | 63 | HEX | This work | |
TFIIE_R | TCCCAGGAGGACATTGTGTA | |||||||||
EXP’ (LOC_Os07g02340) | Expressed | Exp_F | ATGGGCAGAAGTCGAAGATG | 155 | pExp | AGCCAGCTTGAGGCCAACAAGAAGGCC | 64.9 | HEX | This work | |
Exp_R | TTTGCACTTGGTCTCAGAGG | |||||||||
Stele | LOC_Os08g44750 | Nodulin-like protein | 5NG4_F | GCAGATATGGTGCATCGACA | 170 | p5NG4 | GCCTCCCTCACCCTCGGCGAGAGC | 66.4 | FAM | Sato et al. 2013 [15] |
5NG4_R | CCCAGAGGACGAGGTAGAG | |||||||||
OsSHR1 (LOC_Os07g39820) | SHR1 | SHR1_F | CAAGCCGCCTCCG | 79 | pSHR1 | CGTCCTACAACTCGAGG | 70 | HEX | Henry et al. 2017 [16] | |
SHR1_R | TGGACCCGCTCGAC | |||||||||
Cortex | LOC_Os10g18820 | Plant disease response protein | Dis_F | AAGGGATCCACACTTCAGGT | 152 | pDis | GCTGCAAGCAGTGGTGAGTGGTCTGTT | 63.2 | FAM | Sato et al. 2013 [15] |
Dis_R | AGTTCTCGAACAGCATCCTC | |||||||||
LOC_Os06g48950 | OsARF19 | OsARR19_F | TCCTCAGACTCAGAACACCA | 177 | pARF19 | TGCCTGGGCTGAGCTTGGTTCAGTGG | 64.6 | FAM | ||
OsARR19_R | GGTTCTGCAGGCATAATTGC | |||||||||
LOC_Os01g60960 | OsLBD1–8 | OsLBD1–8_F | CGTCCAAGTCCATATCACCG | 198 | pLBD1–8 | CTTCGCCGCTCCTCCTCCTCCTCC | 66.4 | FAM | Yamauchi et al. 2019 [17] | |
OsLBD1–8_R | TTGAGGGAGCTGTAGTCAGT | |||||||||
Outer | LOC_Os10g39890 | Pollen Ole 1 allergen | Ole_F | TTCTACTTCACCCTGTCCCA | 179 | pOle | GGACGGTGCCACCTACTGATCGACCGT | 65.2 | FAM | Sato et al. 2013 [15] |
Ole_R | ACAAAGGCCAAACAACACAC | |||||||||
LOC_Os02g06290 | OsHAC4 | OsHAC4_F | GGAAGGAGAAGAACCCACAC | 188 | pHAC4 | AGGTGTGCGATCCAGGCTCGCGA | 64.5 | FAM | Xu et al. 2017 [18] | |
OsHAC4_R | CTGGCTTTCACTTCGGAGAA | |||||||||
LOC_Os06g44970 | OsPIN2 | OsPIN2_F | CCAGAGCGTCATCTGGTACA | 80 | pPIN2 | CCCTCATGCTCTTCCTCTTCG | 63.6 | FAM | Wang et al. 2018 [19] | |
OsPIN2_R | GGAACTGCTCGGAGATGAG |