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Table 1 Primers for BAC clones verification by PCR and for qPCR experiments

From: The 3D nuclear conformation of the major histocompatibility complex changes upon cell activation both in porcine and human macrophages

Target genes

(MHC Class)

Localization

Primer sequences

Genomic DNA amplicon size (bp)a

cDNA Amplicon size (bp)

(Accession numbers)

SLA-1 (I)

SSC 7p1.1

TGGTGGCTGGAGTTGTGATC

515

66 (NM_001097431)

CCTGAGTGTAGCTCCCTCCT

SLA-DRA (II)

SSC 7q1.1

CCCTCAACCGAGGATGTCTA

432

126 (NM_001113706)

AGCACACACGGTGTTCTCTG

TNFα (III)

SSC 7p1.1

ACTGCACTTCGAGGTTATCGG

887

118 (NM_214022)

GGCGACGGGCTTATCTGA

B2M

SSC 1q1.7

TCATCCAACCCAGATGCA

1733

162 (NM_213978)

TTCTACCTTCTGGTCCACACTGA

HLA-A (I)

HSA 6p22.1

TACAACCAGAGCGAGGC

373

132 (NM_002116)

CTCGTTCAGGGCGATGTAAT

HLA-DRA (II)

HSA 6p21.32

CCCTCAACTGAGGACGTTTA

393

105 (NM_019111)

AGTCTCTGGGAGAGGGCTTG

TNFα (III)

HSA 6p21.33

GCTGCACTTTGGAGTGATCG

916

123 (NM_000594)

TGGGCTACAGGCTTGTCACT

B2M

HSA 15q21.1

TACACTGAATTCACCCCCACTG

2020

143 (NM_004048.2)

TCCAATCCAAATGCGGCATC

  1. aGenome reference sequences: swine Sscrofa11.1; human GRCh38p13