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Table 1 Genes upregulated at mid-tail regression in comparison to the beginning

From: Comparative transcriptomic analysis reveals gene regulation mediated by caspase activity in a chordate organism

KyotoGrail KH gene model

Expression ratio

Identity and/or GO function

References in ascidians/reported functions in animals

KH.C9.385

77,151

histone-lysine N-methyltransferase SMYD3

x

KH.C3.865

64,573

orphan gene

x

KH.C6.306

33,673

glutamate receptor ionotropic, kainate 2 (GRIK2)

x

KH.C11.563

31,576

Breast cancer metastasis-suppressor 1

x

KH.L104.1

19,902

unnamed protein product

x

KH.C3.199

17,833

26S proteasome regulatory subunit (RPT4B)

x

KH.C1.666

13,954

uncharacterized LOC100178010

x

KH.C8.321

12,169

S-adenosyl-L-methionine-dependent methyltransferase

x

KH.C10.250

7367

Fox-1, RNA-binding

x

KH.C2.196

5222

Integrin alpha N-terminal domain

migration

KH.C3.423

4798

At3g29763

x

KH.S403.3

4672

Periplasmic binding protein-like II, UBX domain-containing protein 1

x

KH.S403.8

4672

RSL1D1

x

KH.C12.538

2968

V-type proton ATPase subunit F-like (ATP6V1F)

x

KH.L133.11

2668

protein 248-like; ubiquitine like

x

KH.C4.370

2541

ADAMTS-like protein

x

KH.C1.489

2389

serpin H1; serpin A5

x

KH.C4.134

2290

Spermadhesin; MAM and LDL-receptor class A

x

KH.C4.93

2270

Zonadhesin; MAM and LDL-receptor class A

x

KH.C2.1060

2210

uncharacterized protein LOC100177726

x

KH.C1.22

2196

ubiquitin-conjugating enzyme E2 D3-like (UBE2D3)

x

KH.C4.777

2134

sushi, EGF and pentraxin domain-containing protein 1-like

x

KH.C1.72

2096

zinc finger protein Ap-Zic

x

KH.C13.148

2016

cochlin

x

KH.C13.178

2006

uncharacterized protein LOC100185406

x