Skip to main content

Table 2 Corresponding database entries for zebrafish β1 sequences

From: Identification of multiple integrin β1 homologs in zebrafish (Danio rerio)

Paralog Accession Number Gene Prediction Genomic Location Corresponding (or additional) EST Source of EST
β1–1 DQ149101 GENSCAN00000041635 Chr24 DT075719 whole adult
β1–2 DQ149102 GENSCAN000000132303 Chr24 CF417014 gastrula stage
β1–3 DQ149103 GENSCAN000000132303 Chr24 CK711153 <72 h embryos
β1tr-1 DQ440587 - - - -
β1tr-2 DQ440588 - - - -
β1tr-3 DQ440589 - - CN3281395 liver
ESTa BC0675521 - - CN3290426 liver
ESTb DQ4405902 GENSCAN000000132303 Chr24 DN836198 pooled gut
  1. 1 The complete sequence of ESTa was found to be 100% identical to that of BC067552. A partial sequence of this clone can be found under Genbank Accession number CD285257.
  2. 2 A partial sequence of this clone can be found under Genbank Accession number CF347594.
  3. 3 The sequences of β1–2, β1–3 and ESTb are all contained within a single (inaccurate) gene prediction 2609 residues in length (genome project Zv5).
  4. 4 Latest version of genome project (Zv6).
  5. 5 Identical sequence in coding region but 3'UTR sequence appears to differ. Additional EST BG729583 (kidney).
  6. 6 Other ESTs: CO916860 (olfactory epithelium), CK865233 (testis), CN315944 (liver), CN171841 (kidney), CN320549 (liver).