Table 12 LPM mispredictions in-sample, using 50% as the cutoff probability
UniProt Accession No. | UniProt Position | Protein Length | Sequence | Secondary Structure | Turn Type | Phi angle | Psi angle | ASA | LPM prediction |
|---|---|---|---|---|---|---|---|---|---|
Proteins with LPM predictions < 50%, but that are deemed to be O-glycosylated in the data | |||||||||
P02730 | 224 | 911 | ILEKIPPDSEATLVLVG | Beta Turn | IV | -113 | 168 | 18.8 | 19.3% |
Q16566 | 57 | 473 | ESELGRGATSIVYRCKQ | Beta Turn | I | -83 | -35 | 69.9 | 34.6% |
P16157 | 794 | 1881 | LKVVTDETSFVLVSDKH | Gamma Turn, Beta Turn | Inverse, IV | -54 | 11 | 94.7 | 36.3% |
P68431 | 11 | 136 | RTKQTARKSTGGKAPRK | Loop | N/A | -81 | 145 | 44.4 | 36.3% |
P31749 | 308 | 480 | IKDGATMKTFCGTPEYL | Loop | N/A | -115 | -3 | 47.6 | 44.5% |
P04406 | 229 | 335 | IPELNGKLTGMAFRVPT | Strand | N/A | -157 | 171 | 55.5 | 44.5% |
Proteins with LPM predictions > 50%, but that are deemed to be N-glycosylated in the data | |||||||||
P06756 | 488 SA | 1048 | SILNQDNKTCSLPGTAL | Gamma Turn, Beta Turn | Inverse, IV | -69 | 93 | 63.5 | 51.6% |
P04629 | 329 | 796 | THVNNGNYTLLAANPFG | Beta Hairpin Strand | N/A | -93 | 119 | 30.7 | 62.7% |
Q92854 | 329 | 862 | SAVCAYNLSTAEEVFSH | Beta Hairpin Strand | N/A | -76 | 124 | 35.5 | 70.1% |