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Table 12 LPM mispredictions in-sample, using 50% as the cutoff probability

From: Ridge regression estimated linear probability model predictions of O-glycosylation in proteins with structural and sequence data

UniProt Accession No. UniProt Position Protein Length Sequence Secondary Structure Turn Type Phi angle Psi angle ASA LPM prediction
Proteins with LPM predictions < 50%, but that are deemed to be O-glycosylated in the data
 P02730 224 911 ILEKIPPDSEATLVLVG Beta Turn IV -113 168 18.8 19.3%
 Q16566 57 473 ESELGRGATSIVYRCKQ Beta Turn I -83 -35 69.9 34.6%
 P16157 794 1881 LKVVTDETSFVLVSDKH Gamma Turn, Beta Turn Inverse, IV -54 11 94.7 36.3%
 P68431 11 136 RTKQTARKSTGGKAPRK Loop N/A -81 145 44.4 36.3%
 P31749 308 480 IKDGATMKTFCGTPEYL Loop N/A -115 -3 47.6 44.5%
 P04406 229 335 IPELNGKLTGMAFRVPT Strand N/A -157 171 55.5 44.5%
Proteins with LPM predictions > 50%, but that are deemed to be N-glycosylated in the data
 P06756 488 SA 1048 SILNQDNKTCSLPGTAL Gamma Turn, Beta Turn Inverse, IV -69 93 63.5 51.6%
 P04629 329 796 THVNNGNYTLLAANPFG Beta Hairpin Strand N/A -93 119 30.7 62.7%
 Q92854 329 862 SAVCAYNLSTAEEVFSH Beta Hairpin Strand N/A -76 124 35.5 70.1%