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Table 3 Results of the redocking experiments performed on the LEADS dataset. Description as in Table 1

From: Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins

PDB ID

DoFs

atoms

Vina

Vina100

12 Ă—Vina

24 Ă—Vina

DINC

288 Ă—Vina

DINC best

1UOP

11

32

2.42 ±1.56

1.61 ±0.14

1.07 ±0.10

1.01 ±0.12

1.09 ±0.14

0.62

0.62

2HPL

17

41

2.41 ±0.26

2.41 ±0.43

1.73 ±0.21

1.40 ±0.11

1.62 ±0.33

1.08

1.08

4V3I

18

41

5.44 ±0.67

4.68 ±0.18

4.28 ±0.36

3.58 ±0.90

3.90 ±1.03

2.00

2.00

3OBQ

19

62

4.91 ±2.12

7.87 ±0.47

4.33 ±0.73

4.08 ±0.91

2.67 ±1.02

1.29

1.29

3LNY

20

44

4.26 ±1.31

7.44 ±4.81

2.04 ±0.16

1.88 ±0.07

1.86 ±0.06

1.37

1.37

3D1E

20

45

5.41 ±2.41

5.48 ±2.33

2.30 ±0.61

2.26 ±0.41

1.98 ±0.34

1.27

1.27

2W0Z

20

67

4.16 ±1.47

4.68 ±0.05

3.31 ±1.12

2.64 ±0.38

2.67 ±0.64

1.10

1.10

1SVZ

21

55

3.20 ±1.05

1.70 ±0.51

1.38 ±0.22

1.44 ±0.20

1.40 ±0.04

0.79

0.79

3Q47

22

53

2.75 ±1.55

1.13 ±0.16

1.01 ±0.12

0.95 ±0.09

0.92 ±0.08

0.76

0.76

3IDG

23

53

4.65 ±0.39

2.92 ±0.86

3.09 ±0.16

2.63 ±0.46

1.87 ±0.14

1.75

1.57

3UPV

24

55

4.56 ±0.69

3.64 ±1.57

1.88 ±0.56

1.36 ±0.27

2.33 ±0.80

1.14

1.14

3CH8

24

66

2.70 ±2.29

1.00 ±0.26

0.89 ±0.22

0.86 ±0.13

0.70 ±0.04

0.67

0.60

4Q6H

25

51

8.34 ±0.45

7.89 ±0.23

4.99 ±0.89

5.19 ±1.38

3.93 ±0.20

3.72

1.81

3NJG

26

58

5.01 ±2.77

1.46 ±0.16

1.25 ±0.13

1.25 ±0.09

1.09 ±0.18

1.07

0.99

1ELW

26

60

4.28 ±1.38

4.83 ±0.46

3.42 ±0.29

2.93 ±0.46

3.13 ±0.29

2.31

2.31

4QBR

27

53

2.72 ±0.53

2.42 ±0.44

1.50 ±0.26

1.51 ±0.20

1.37 ±0.16

1.16

1.16

1N7F

27

62

12.46 ±0.79

12.48 ±0.71

9.92 ±1.97

9.96 ±0.39

6.89 ±0.56

6.38

3.77

3MMG

29

60

5.28 ±2.93

1.72 ±0.37

1.58 ±0.35

1.86 ±0.29

1.16 ±0.21

1.16

1.16

2O02

32

68

4.98 ±0.70

5.06 ±0.73

4.32 ±0.65

4.36 ±0.34

2.83 ±0.25

3.18

1.97

3BRL

32

68

7.23 ±0.34

7.15 ±1.27

5.03 ±0.33

4.49 ±0.79

3.36 ±0.57

2.92

1.46

2W10

32

90

8.17 ±2.77

7.52 ±1.32

3.83 ±0.97

3.21 ±0.25

3.16 ±0.69

2.15

2.15

4EIK

34

86

4.06 ±0.96

1.94 ±0.53

1.75 ±0.44

1.81 ±0.25

1.35 ±0.22

0.98

0.98

4DS1

35

77

7.34 ±2.16

7.32 ±2.39

4.49 ±1.89

5.14 ±0.31

1.35 ±0.19

1.17

1.17

1NTV

39

89

5.84 ±0.82

5.67 ±1.22

4.03 ±1.08

4.07 ±0.21

3.92 ±0.58

1.85

1.85

1N12

40

85

10.04 ±2.88

2.75 ±1.21

4.39 ±1.65

3.77 ±1.72

4.05 ±1.57

1.84

1.44

2QAB

41

79

6.22 ±0.74

5.79 ±0.62

4.75 ±0.25

4.52 ±0.37

5.16 ±0.28

3.90

3.90

3DS1

41

95

6.19 ±0.12

5.94 ±0.48

5.15 ±0.32

4.34 ±1.37

3.65 ±1.02

1.73

1.73

1H6W

42

85

11.98 ±0.94

8.19 ±3.88

9.68 ±0.93

10.12 ±0.15

1.57 ±0.20

2.38

1.57

3BFW

43

89

6.52 ±1.72

2.19 ±1.44

2.98 ±0.89

2.64 ±1.18

3.49 ±1.06

1.59

1.41

2XFX

43

90

6.22 ±1.44

4.56 ±1.26

4.30 ±0.99

3.02 ±0.95

2.52 ±0.67

1.72

1.11

4DGY

44

98

6.88 ±0.90

4.96 ±1.13

3.27 ±1.09

4.29 ±0.39

3.39 ±0.96

1.93

1.93

4J8S

50

102

6.04 ±1.36

6.03 ±0.41

5.10 ±0.31

4.72 ±0.23

4.54 ±0.38

4.45

2.96

2B9H

52

101

8.20 ±3.14

8.49 ±2.58

5.39 ±0.48

4.70 ±0.35

4.13 ±0.40

3.56

3.56

average

5.78 ±1.38

4.82 ±1.05

3.59 ±0.63

3.39 ±0.48

2.70 ±0.46

1.97

1.64