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Table 5 Comparison results with SVM

From: Recognizing ion ligand binding sites by SMO algorithm

Ligand

Method

Sn (%)

Sp (%)

Acc (%)

MCC

Zn2+

OUR’S

94.2

84.2

89.2

0.789

SMO

94.8

83.7

89.3

0.790

SVM

99.8

99.5

99.7

0.993

Cu2+

OUR’S

91.3

86.8

89.0

0.782

SMO

90.3

88.9

89.6

0.792

SVM

95.5

97.1

96.3

0.926

Fe2+

OUR’S

90.1

81.9

86.0

0.722

SMO

89.3

82.5

85.9

0.719

SVM

91.9

90.7

91.3

0.826

Fe3+

OUR’S

86.2

85.5

85.9

0.717

SMO

85.5

86.0

85.8

0.715

SVM

86.9

88.7

87.8

0.756

Ca2+

OUR’S

68.8

75.3

72.1

0.443

SMO

69.5

75.4

72.5

0.450

SVM

71.3

79.1

74.8

0.502

Mg2+

OUR’S

71.1

73.1

72.1

0.442

SMO

70.0

72.3

71.2

0.423

SVM

76.6

73.9

75.3

0.505

Mn2+

OUR’S

82.0

83.9

83.0

0.659

SMO

80.3

83.3

81.8

0.636

SVM

82.1

84.4

83.2

0.664

Na+

OUR’S

68.9

74.0

71.0

0.430

SMO

70.8

71.8

71.3

0.425

SVM

82.2

76.2

79.4

0.586

K+

OUR’S

71.6

64.5

68.0

0.362

SMO

74.2

62.6

68.4

0.371

SVM

77.3

83.2

80.3

0.607

Co2+

OUR’S

75.3

86.4

80.9

0.621

SMO

75.1

86.2

80.6

0.616

SVM

80.8

85.1

83.0

0.660

NO2

OUR’S

80.6

88.8

84.7

0.696

SMO

SVM

CO32−

OUR’S

79.4

81.6

80.5

0.611

SMO

SVM

SO42−

OUR’S

75.6

72.2

74.0

0.478

SMO

SVM

PO43−

OUR’S

76.2

78.0

77.1

0.542

SMO

SVM