Table 3 Features used in this study
From: Prediction of novel mouse TLR9 agonists using a random forest approach
S.no | Feature | Description | Type |
|---|---|---|---|
1 | A | Count of A nucleotides | Numerical |
2 | T | Count of T nucleotides | Numerical |
3 | G | Count of G nucleotides | Numerical |
4 | C | Count of C nucleotides | Numerical |
5 | d_CG2_1 | Distance between occurrences 2 and 1 of CG motif | Numerical |
6 | d_CG3_1 | Distance between occurrences 3 and 1 of CG motif | Numerical |
7 | d_CG3_2 | Distance between occurrences 3 and 2 of CG motif | Numerical |
8 | d_AG2_1 | Distance between occurrences 2 and 1 of AG motif | Numerical |
9 | d_AG3_1 | Distance between occurrences 3 and 1 of AG motif | Numerical |
10 | d_AG3_2 | Distance between occurrences 3 and 2 of AG motif | Numerical |
11 | d_GG2_1 | Distance between occurrences 2 and 1 of GG motif | Numerical |
12 | d_GG3_1 | Distance between occurrences 3 and 1 of GG motif | Numerical |
13 | d_GG3_2 | Distance between occurrences 3 and 2 of GG motif | Numerical |
14 | d_CC2_1 | Distance between occurrences 2 and 1 of CC motif | Numerical |
15 | d_CC3_1 | Distance between occurrences 3 and 1 of CC motif | Numerical |
16 | d_CC3_2 | Distance between occurrences 3 and 2 of CC motif | Numerical |
17 | d_TCT2_1 | Distance between occurrences 2 and 1 of TCT motif | Numerical |
18 | d_TCT3_1 | Distance between occurrences 3 and 1 of TCT motif | Numerical |
19 | d_TCT3_2 | Distance between occurrences 3 and 2 of TCT motif | Numerical |
20 | d_TTC2_1 | Distance between occurrences 2 and 1 of TTC motif | Numerical |
21 | d_TTC3_1 | Distance between occurrences 3 and 1 of TTC motif | Numerical |
22 | d_TTC3_2 | Distance between occurrences 3 and 2 of TTC motif | Numerical |
23 | d_TGT2_1 | Distance between occurrences 2 and 1 of TGT motif | Numerical |
24 | d_TGT3_1 | Distance between occurrences 3 and 1 of TGT motif | Numerical |
25 | d_TGT3_2 | Distance between occurrences 3 and 2 of TGT motif | Numerical |
26 | PMI1 | Principal Moment of Inertia 1 | Numerical |
27 | PMI2 | Principal Moment of Inertia 2 | Numerical |
28 | Mu_x | Center of mass in x direction | Numerical |
29 | Mu_y | Center of mass in y direction | Numerical |
30 | CG1 | Presence of CG at position 1 | Fingerprint |
31 | GC1 | Presence of GC at position 1 | Fingerprint |
32 | GT1 | Presence of GT at position 1 | Fingerprint |
33 | GT18 | Presence of GT at position 18 | Fingerprint |
34 | GCG6 | Presence of GCG at position 6 | Fingerprint |
35 | GT22 | Presence of GT at position 22 | Fingerprint |
36 | GT21 | Presence of GT at position 21 | Fingerprint |
37 | CGCG5 | Presence of CGCG at position 5 | Fingerprint |
38 | GC5 | Presence of GC at position 5 | Fingerprint |
39 | GT12 | Presence of GT at position 12 | Fingerprint |
40 | TC9 | Presence of TC at position 9 | Fingerprint |